CheriPic
Home
Usage Instruction
FAQ
Shiny App
Test Data
This data can be used to fill and submit this form for testing and demonstration.
Assembly
Input Assembly file
Bulk Data
Input file format
vcf
pileup
bam
Cross type
out cross
back cross
Mutant bulk input file
Background bulk input file
Mutant bulk input vcf file
Background bulk input vcf file
Options
Homozygosity Settings
HME score adjuster
Heterozygosity low limit
Heterozygosity high limit
Read Settings
Minimum read coverage
Maximum read coverage
Multiplication factor avg read coverage
Minimum alternate read coverage
Minimum indel read coverage
Ambiguous reference position
Alignment Settings
Minimum mapping quality
Minimum base quality
Read noise
Misc Settings
Use all contigs in analysis
No HME or BFR score cut off
Polyploid data
Masking Settings
Mutant parent pileup file
Background parent pileup file
Repeat masker output file
BFR score adjuster
Output Settings
Selected variant adjacent seq length out
Get notified by email when the output is ready
